Papers in International Journals

• Inostroza A.H.; Gjini, Erida (2024)  MetaSpread: A cancer growth and metastatic spread simulation program in Python . biorxiv preprint.

• Costa, C., Sirard, J. C., Gibson, P. S.,; Gjini, Erida; Baldry, M. (2024)  Triggering Toll-Like Receptor 5 signaling during pneumococcal superinfection prevents the selection of antibiotic resistance. . Journal of Infectious Diseases.

• Freire, Tomas ; Hu, Z; Wood, K. B.; Gjini, Erida (2024)  Modeling spatial evolution of multi-drug resistance under drug environmental gradients . PLOS Computational Biology.

• Le, T.M.T.; Madec, S.; Gjini, Erida (2024)  Nested inference of pairwise interactions from strain frequency data across settings and context-dependent mutual invasibilities . biorxiv preprint.

• Ermanda Dekaj; Gjini, Erida (2024)  Pneumococcus and the stress-gradient hypothesis: a trade-off links R0 and susceptibility to co-colonization across countries . Theoretical Population Biology: 156, 77-92.

• Le, Thi Minh Thao; Gjini, Erida; Madec, Sten (2023)  Quasi-neutral Dynamics in a Coinfection System with N Strains and Asymmetries along Multiple Traits . Journal of Mathematical Biology: 87, Nr. 48.

• Gjini, Erida; Madec, Sten (2023)  Towards a mathematical understanding of invasion resistance in multispecies communities . Royal Society Open Science: 11 (13).

• Le, Thi Minh Thao; Madec, Sten; Gjini, Erida (2022)  Disentangling how multiple traits drive 2 strain frequencies in SIS dynamics with coinfection . Journal of Theoretical Biology: Volume 538, 111041, 0022-5193.

• Sandra Trindade, ...; Gjini, Erida; Luisa M. Figueiredo (2022)  Slow growing behavior in African trypanosomes during adipose tissue colonization . Nature Communications: 13, article number 7548.

• Gjini, Erida; Wood, Kevin B. (2021)  Price equation captures the role of drug interactions and collateral effects in the evolution of multidrug resistance . eLife: 10, e64851.

• Gjini, Erida; Madec, Sten (2021)  The ratio of single to co-colonization is key to complexity in interacting systems with multiple strains . Ecology and Evolution: 11 (13).

• Madec, Sten; Gjini, Erida (2020)  Predicting N-Strain Coexistence from Co-colonization Interactions: Epidemiology Meets Ecology and the Replicator Equation . Bulletin of Mathematical Biology: 82 (142).

Other selected publications:

Gjini E. (2017) Geographic variation in pneumococcal vaccine efficacy estimated from dynamic modeling of epidemiological data post-PCV7 Nature Scientific Reports 7: 3049 | DOI:10.1038/s41598-017-02955-y 

Gjini E. and Madec S. (2016) A slow-fast dynamic decomposition links neutral and non-neutral coexistence in interacting multi-strain pathogens.Theoretical Ecology  pp:1-13, doi:10.1007/s12080-016-0320-1

Gjini E. and Brito P.H. (2016) Integrating Antimicrobial Therapy with Host Immunity to Fight Drug-Resistant Infections: Classical vs. Adaptive treatment. PLoS Computational Biology 12(4), e1004857. DOI:10.1371/journal.pcbi.1004857   

Gjini E., Valente C., Sa-Leao R., Gomes, M.G.M. (2016) How direct competition shapes coexistence and vaccine effects in multi-strain pathogen systems. Journal of Theoretical Biology  388:50-60, DOI: 10.1016/j.jtbi.2015.09.031

Gjini, E., Haydon, D.T., Barry, J.D. and Cobbold, C.A. (2014) Revisiting the difffusion approximation to estimate evolutionary rates of gene family diversification. Journal of Theoretical Biology. 341:111-22.

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